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Atlas / Biology / The Development Thread

Field · Emerged 1961 – 2006

Stem Cell Biology

Which cells can make new cells of other kinds, and can an ordinary cell be turned back into one?

5 chapters5 min read7 turning points1 open problem

Branched from
Experimental Embryology + Cell Biology
Branched into
Not yet surveyed past here
Figures
James Till, Ernest McCulloch, Martin Evans, Gail Martin, James Thomson, Shinya Yamanaka, Kazutoshi Takahashi, Toshiro Sato, Hans Clevers

In brief

A stem cell is a cell that can both copy itself and give rise to specialised cells. Adult tissues such as blood, skin and gut lining are renewed throughout life by their own stem cells. The cells of an early embryo go further: they can become any cell type in the body, a property called pluripotency.

Stem cell biology began in 1961 with the discovery of the cells that rebuild the blood after radiation. Embryonic stem cells, grown from mouse embryos in 1981 and human embryos in 1998, made pluripotent cells available in a dish, and raised fierce ethical arguments. In 2006 Shinya Yamanaka showed that four genes can turn an ordinary skin cell back into a pluripotent one, without an embryo. The field has also had two of the most notorious frauds in modern science, and its promised cures have come more slowly than its headlines.

Key ideas

Stem cellEnters 1961 – 1963

A cell that can divide to make more of itself and also make specialised cells. The blood stem cells in bone marrow make every kind of blood cell for life.

PluripotencyEnters 1981

The ability to become any cell type of the body. Cells of the early embryo have it, and embryonic stem cells keep it indefinitely in culture.

ReprogrammingEnters 2006 – 2007

Turning a specialised cell back into a pluripotent one. It can be done by transferring its nucleus into an egg, or by switching on a few master genes.

OrganoidEnters 2009

A small, simplified organ grown in a dish from stem cells, which organise themselves into the organ's typical structure.

Chapter I

The Blood's Reserve

After the atomic bombs of 1945, doctors wanted to know why radiation kills. At moderate doses the main cause is the loss of the bone marrow, which makes blood. In Toronto in 1961, James Till, a physicist, and Ernest McCulloch, a physician, injected marrow into irradiated mice and saw lumps on their spleens. Each lump grew from a single cell and held several kinds of blood cells, as well as cells that could make new lumps in another mouse. They had found the blood stem cell, a cell that renews itself and makes specialised descendants. Doctors had already begun trying bone marrow transplants, without knowing which cells did the work.

Chapter II

Cells from Embryos

Stem cells in adults are rare and usually limited to one tissue. The early embryo has cells that can become anything, but only for a day or two. In 1981 Martin Evans with Matthew Kaufman, and Gail Martin, found how to keep them in that state in a dish. Mouse embryonic stem cells divide indefinitely and, put back into an embryo, take part in building every tissue. Combined with methods for altering a chosen gene, they let researchers make mice lacking any gene they wished, which became a basic tool of developmental genetics.

In 1998 James Thomson grew human embryonic stem cells. Hopes rose for replacement cells for diabetes, Parkinson's disease and spinal injury, and so did objections to using human embryos. One way round seemed to be cloning, which would make stem cells matched to a patient. In 2004 and 2005 Hwang Woo-suk in Seoul claimed to have done it. The data were fabricated. A later analysis suggested that his one genuine line had arisen from an unfertilised egg that began dividing on its own, not from cloning.

Chapter III

Four Genes

John Gurdon's frogs, in experimental embryology, had shown that an egg can reset a specialised nucleus. In 1987 Harold Weintraub's group had shown that a single gene, MyoD, can turn a fibroblast, a connective-tissue cell, into a muscle cell. Shinya Yamanaka wondered whether the genes that keep embryonic stem cells pluripotent could reset a skin cell without an egg. With Kazutoshi Takahashi he picked 24 candidates, put them all into mouse skin cells together, and got colonies that looked like embryonic stem cells. They then worked out which genes mattered, and in 2006 reported that four were enough. Their induced pluripotent stem cells, or iPS cells, avoided both the embryo and the egg.

Chapter IV

A Closer Look: Finding Four Genes Among Twenty-Four

Yamanaka's team suspected that some combination of their 24 candidate genes could reprogram a cell. How many combinations are there? Each gene can be in or out of the mixture, so

224=16,777,2162^{24} = 16{,}777{,}216

possible mixtures. Even restricted to mixtures of exactly four genes, there are

(244)=24×23×22×214×3×2×1=10,626.\binom{24}{4} = \frac{24 \times 23 \times 22 \times 21}{4 \times 3 \times 2 \times 1} = 10{,}626 .

Each test took weeks, so testing combinations one by one was hopeless. Instead they used subtraction. First, all 24 together: colonies formed. Then 24 more experiments, each leaving out one gene. Where leaving a gene out made the colonies disappear or become much rarer, that gene mattered. This narrowed the list to 10. The same trick on the 10, with 10 more experiments, gave 4:

StepExperiments
All 24 genes together1
Leave out each of 24 in turn24
The 10 remaining together1
Leave out each of 10 in turn10
Total36

In outline, about thirty-six experiments instead of ten thousand. The published work ran more controls than this, but the logic was the same. The method works because the effect needs every essential gene at once: leaving out any one of them breaks it.

Reprogramming was rare. In the early experiments only a small fraction of cells, commonly quoted as between 0.01 and 0.1 per cent, became iPS colonies. From a dish of one million cells that means 100 to 1,000 colonies. It was enough to find, pick and grow them, and later studies showed that the rest were not incapable, only slower: given time, nearly every cell can make the switch.

Chapter V

Cells to Organs

iPS cells spread quickly because anyone could make them from a skin sample, with no embryo involved. Patients' own cells could be turned into neurons or heart cells to study their disease in a dish. In 2009 Toshiro Sato and Hans Clevers showed that single stem cells from the gut, given the right signals, build miniature gut linings, a founding result for the modern study of organoids. The field also suffered a second scandal in 2014, when claims that an acid bath could make stem cells collapsed within months. In 2026 Japan gave conditional, time-limited approval to the first two treatments made from iPS cells: nerve cells for Parkinson's disease and sheets of heart muscle for heart failure. Replacing a whole organ remains out of reach. It will need what developmental genetics has learned about how organs are laid out, and what cell biology knows about how cells hold their shape and identity.

Applications

Where it is used

Open problems

Where the map runs out

Open

Can stem cells rebuild a working organ?

Open as of 2026; the first iPS-derived cell therapies won conditional approval in Japan in 2026, but whole organs are not in reach.

Stem cells can now be turned into heart muscle, nerve cells, retina and insulin-making cells, and organoids mimic parts of many organs. None of these is yet a replacement organ. Can a kidney, a liver or a heart be grown with its blood supply, nerves and full size, and work for decades in a patient?

Why it is hard

Organs need several cell types in the right arrangement, blood vessels deep inside them, and signals that make cells mature fully. Organoids stay small and immature. Cells made from pluripotent stem cells can also carry a risk of tumours if any stay undifferentiated.

What resolving it unlocks

An end to waiting lists for transplants, and treatments for diabetes, heart failure and degenerative diseases of the brain and eye.

› Sources (2)

Further reading

  1. Slack, J. M. W. (2012). Stem Cells: A Very Short Introduction. Oxford University Press.

    A brief, balanced introduction to the science and the hype.

  2. Knoepfler, P. (2013). Stem Cells: An Insider's Guide. World Scientific.

    A practical guide, including how to judge claims of stem cell cures.

  3. Gurdon, J. B. & Melton, D. A. (2008). Nuclear reprogramming in cells. Science 322(5909): 1811–1815.

    A review of reprogramming, from frogs to induced stem cells.