Atlas / Biology
Domain · 5 threads · 25 fields
Biology
How evolution and heredity, long at odds, merged, and how reading DNA rewrote both. How the cell became the unit of life and disease, how the brain was found to signal with electricity and chemistry, how the study of where species live became the science of ecosystems, and how a single egg builds a body.
Thread 01 · 5 fields
The Heredity Thread
From Darwin's natural selection and Mendel's peas to the genome. For decades the two founding ideas of modern biology seemed incompatible: Darwin needed variation to accumulate, and the heredity of his day blended it away. Mendel's discrete genes rescued natural selection, molecular biology found what genes are made of, and genomics now reads them by the billion. The map runs into fog at life's origin, and in the long stretches of DNA whose purpose no one knows.
Scroll the map sideways →
- Charted: settled results
- Contested: sources disagree on priority or causation
- Unmapped: open problems
Fields in this thread
- 1866 – 1915GeneticsHow are traits passed from parents to offspring?One of the thread's roots
- 1838 – 1859Evolutionary BiologyWhy are living things so varied, and so well suited to the lives they lead?One of the thread's roots
- 1944 – 1966Molecular BiologyWhat are genes made of, and how do they build a living cell?Branched from Genetics + Biochemistry (The Cell Thread)
- 1908 – 1947Population GeneticsHow do gene frequencies change in populations, and is that enough to explain evolution?Branched from Evolutionary Biology + Genetics
- 1977 – 2003GenomicsWhat can be learned by reading entire genomes, and comparing them?Branched from Molecular Biology + Population Genetics
Thread 02 · 5 fields
The Cell Thread
From cork under a microscope to the machinery inside every living thing. The first microscopes revealed that plants and animals are built of tiny compartments, and that invisible organisms swarm in every drop of water. It took two centuries to see what that meant: every living thing is made of cells, every cell comes from another, and many diseases are caused by microbes. Chemistry then showed that cells run on enzymes and a universal currency of energy, microscopes of electrons and light mapped their inner machinery, and immunology found how the body tells its own cells from invaders. The fog here is how little a cell can be and still live, how cells know their own size, and why some pathogens still defeat every vaccine.
Scroll the map sideways →
- Charted: settled results
- Contested: sources disagree on priority or causation
- Unmapped: open problems
Fields in this thread
- 1665 – 1882Cell TheoryWhat are living things made of, and where do new cells come from?Root of the thread
- 1847 – 1928MicrobiologyWhat are the invisible organisms around us, and do they cause disease?Branched from Cell Theory
- 1828 – 1961BiochemistryWhat chemical reactions keep a cell alive, and how does it power them?Branched from Cell Theory
- 1931 – 1987Cell BiologyHow is the inside of a cell organised, and how does a cell control its growth and division?Branched from Cell Theory + Biochemistry
- 1796 – 1976ImmunologyHow does the body recognise invaders it has never met, and remember them for life?Branched from Microbiology + Cell Biology
Thread 03 · 5 fields
The Brain Thread
From Galvani's twitching frog legs to the wiring diagram of a fly. For centuries the brain was a soft grey mass with no visible parts fine enough to explain a thought. Doctors found that damage to one patch could destroy speech and nothing else, a silver stain showed that the brain is built of separate cells, and physiologists learned that those cells signal with pulses of electricity and pass them on with chemicals released in packets. Recordings from single neurons then found cells that respond to edges and cells that mark a place, and theorists asked whether all of this is computation, a question that gave rise to today's artificial neural networks. The fog here is how a memory is stored, what causes Alzheimer's disease, and why any of this activity is accompanied by experience at all.
Scroll the map sideways →
- Charted: settled results
- Contested: sources disagree on priority or causation
- Unmapped: open problems
Fields in this thread
- 1664 – 1909NeuroanatomyWhat is the brain built from, and do its different parts do different jobs?Branched from Cell Theory (The Cell Thread)
- 1791 – 1952ElectrophysiologyWhat is a nerve impulse, and how does a nerve cell make and carry it?Branched from Neuroanatomy
- 1957 – 2005Systems NeuroscienceHow do circuits of neurons represent the world, remember it, and guide behaviour?Branched from Neuroanatomy + Electrophysiology
- 1904 – 1973Synaptic TransmissionHow does one nerve cell pass its signal to the next, and how does that connection change with experience?Branched from Electrophysiology + Biochemistry (The Cell Thread)
- 1943 – 1986Computational NeuroscienceCan what the brain does be described as computation, and if so, what does it compute and how?Branched from Systems Neuroscience + Synaptic Transmission
Thread 04 · 5 fields
The Ecology Thread
From Humboldt's mountain to the Red List. Humboldt saw that the plants on a tropical mountain are layered like the climates from the equator to the poles, and Wallace traced a line through the islands of Southeast Asia that divides the animals of Asia from those of Australia. Explaining where species live led to counting them: how populations grow, crash and cycle, how competing species share one place, and how energy and nutrients flow through a whole lake or forest. By the 1960s the same science was measuring what people were doing to the living world, and conservation biology was founded as a discipline built for a crisis. The fog here is why the tropics hold so many species, how so many competitors manage to live together, and whether an ecosystem's collapse can be seen coming.
Scroll the map sideways →
- Charted: settled results
- Contested: sources disagree on priority or causation
- Unmapped: open problems
Fields in this thread
- 1807 – 1876BiogeographyWhy do species live where they do, and why do some places hold so many more of them?Branched from Evolutionary Biology (The Heredity Thread)
- 1838 – 1934Population EcologyWhat sets the size of a population, and why do some populations boom and crash?Branched from Biogeography
- 1916 – 1966Community EcologyHow do many species share one place, and what decides which of them live together?Branched from Population Ecology
- 1935 – 1953Ecosystem EcologyHow do energy and chemical elements flow through living things and their surroundings?Branched from Community Ecology
- 1962 – 1985Conservation BiologyHow fast are species being lost, and what does it take to keep them?Branched from Community Ecology + Population Genetics (The Heredity Thread)
Thread 05 · 5 fields
The Development Thread
From Aristotle's opened eggs to skin cells turned back into stem cells. For two thousand years the question was whether a body is already present in miniature in the egg or builds itself step by step. Microscopes settled it for gradual building, and experiments on living embryos showed that cells are told what to become by their neighbours, without losing any of their genes. Mutant flies and worms then revealed the genes that do the telling, and the surprise that nearly all animals share them. The same understanding showed how to reset a specialised cell, and grow tissues in a dish. The fog here is how an organ knows when to stop growing, why a salamander can regrow a leg when we cannot, and how evolution makes something genuinely new.
Scroll the map sideways →
- Charted: settled results
- Contested: sources disagree on priority or causation
- Unmapped: open problems
Fields in this thread
- 1651 – 1874EmbryologyHow does a single egg turn into a body with a head, a heart and limbs?Root of the thread
- 1888 – 1969Experimental EmbryologyWhat tells each cell of an embryo what to become?Branched from Embryology
- 1978 – 1988Developmental GeneticsWhich genes build an embryo, and how do they switch each other on in the right place?Branched from Experimental Embryology + Genetics (The Heredity Thread)
- 1961 – 2006Stem Cell BiologyWhich cells can make new cells of other kinds, and can an ordinary cell be turned back into one?Branched from Experimental Embryology + Cell Biology (The Cell Thread)
- 1984 – 2005Evolutionary Developmental BiologyIf all animals are built with the same genes, how did evolution make them so different?Branched from Developmental Genetics + Evolutionary Biology (The Heredity Thread)